Center for Clinical Investigation

Academic home of the Cleveland Clinical and Translational Science Collaborative.

Jump to: navigation, search

Licong Cui has moved to the Department of Computer Science at the University of Kentucky (click here). She was a research assistant professor in the Department of Electrical Engineering and Computer Science and Division of Medical Informatics at Case Western Reserve University. Licong Cui received her Ph.D. in Computer Science from Case Western Reserve University.

Research Interests

  • Information retrieval
  • Information extraction
  • Text mining
  • Data integration and management
  • Ontology quality assurance
  • Big data analytics
  • Biomedical Informatics


Selected Publications

(* indicates corresponding author)

  1. Cui L, Tao S, Zhang GQ. Biomedical Ontology Quality Assurance Using a Big Data Approach. ACM Transactions on Knowledge Discovery from Data. [In press]
  2. Xing G, Cui L, Zhang GQ. FEDRR: Fast, Exhaustive Detection of Redundant Hierarchical Relations in Large Biomedical Ontologies. International Workshop on Biomedical Data Mining, Modeling, and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs (BDM2I 2015). [In press]
  3. Sun M, Zhu W, Tao S, Cui L, Zhang GQ. COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments. AMIA Annual Symp Proc 2015. [In press]
  4. Cui L*. COHeRE: Cross-Ontology Hierarchical Relation Examination for Ontology Quality Assurance. AMIA Annual Symp Proc 2015. [In press]
  5. Zhu W, Zhang GQ, Tao S, Sun M, Cui L*. NEO: Systematic Non-Lattice Embedding of Ontologies for Comparing the Subsumption Relationship in SNOMED CT and in FMA Using MapReduce. AMIA Joint Summits on Translational Science 2015, pp. 216-220.
  6. Tao S, Cui L, Zhu W, Sun M, Bodenreider O, Zhang GQ. Mining Relation Reversals in the Evolution of SNOMED CT Using MapReduce. AMIA Joint Summits on Translational Science 2015, pp. 46-50.
  7. Luo Z, Zhang GQ, Wentz S, Cui L, Xu R. SimQ: Real-Time Retrieval of Similar Consumer Health Questions. Journal of Medical Internet Research, 2015; 17(2):e43. [paper]
  8. Cui L, Sahoo SS, Lhatoo SD, Garg G, Rai P, Bozorgi A, Zhang GQ. Complex Epilepsy Phenotype Extraction from Narrative Clinical Discharge Summaries. Journal of Biomedical Informatics, 2014; 51:272-279. [paper]
  9. Zhang GQ, Zhu W, Sun M, Tao S, Bodenreider O, Cui L*. MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT. IEEE International Conference on Big Data 2014 (IEEE BigData 2014), pp. 754-759. [paper]
  10. Cui L, Xu R, Luo Z, Wentz S, Scarberry K, Zhang GQ. Multi-topic Assignment for Exploratory Navigation of Consumer Health Information in NetWellness using Formal Concept Analysis. BMC Medical Informatics and Decision Making, 2014;14:63. [paper, highly accessed]
  11. Cui L, Carter R, Zhang GQ. Evaluation of a Novel Conjunctive Exploratory Navigation Interface for Consumer Health Information: A Crowdsourced Comparative Study. Journal of Medical Internet Research, 2014;16(2):e45. [paper]
  12. Sahoo SS, Lhatoo SD, Gupta DK, Cui L, Zhao M, Jayapadian C, Bozorgi A, Zhang GQ. Epilepsy and Seizure Ontology: Towards an Epilepsy Informatics Infrastructure for Clinical Research and Patient Care. Journal of American Medical Informatics Association (JAMIA), 2014;21(1):82-9. [paper]
  13. Sahoo SS, Tao S, Parchman A, Luo Z, Cui L, Mergler P, Lanese R, Barnholtz-Sloan JS, Meropol NJ, Zhang GQ. Trial Prospector: Matching Patients with Cancer Research Studies Using an Automated and Scalable Approach. Cancer Informatics, 2014;13:157-166. [paper]
  14. Cui L, Tao S, Zhang GQ. A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS. AMIA Annual Symp Proc 2014, pp. 432-441. [paper]
  15. Zhang GQ, Cui L, Lhatoo S, Schuele S, Sahoo S. MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System. AMIA Annual Symp Proc 2014, pp. 1248-1257. [paper]
  16. Sun J, Bogie KM, Teagno J, Sun YH, Carter RR, Cui L, Zhang GQ. Design and Implementation of a Comprehensive Web-based Survey For Ovarian Cancer Survivorship With Analysis of Pre-diagnostic Symptoms via Text Mining. Cancer Informatics, 2014;Suppl. 3:113-123. [paper]
  17. Cui L, Mueller R, Sahoo SS, Zhang GQ. Querying Complex Federated Clinical Data Using Ontological Mapping and Subsumption Reasoning. IEEE International Conference on Healthcare Informatics 2013 (ICHI 2013), pp. 351-360. [paper]
  18. Zhang GQ, Cui L*, Teagno J, Kaebler D, Koroukian S, Xu R. Merging Ontology Navigation with Query Construction for Web-based Medicare Data Exploration. AMIA Summit on Clinical Research Informatics (CRI) 2013, pp. 285-289. [paper]
  19. Cui L*, Bozorgi A, Lhatoo SD, Zhang GQ, Sahoo SS. EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification. AMIA Annual Symp Proc 2012, pp. 1191-1200. [paper]
  20. Cui L, Zhang GQ. A generalized non-pumping lemma for regular languages. World Scientific Proceedings Series on Computer Engineering and Information Science (QUANTITATIVE LOGIC AND SOFT COMPUTING 2012), pp. 420-427. [paper]
  21. Zhang GQ, Zhou X, Fraser R, Cui L. Concatenation and Kleene Star on Deterministic Finite Automata. World Scientific Proceedings Series on Computer Engineering and Information Science (QUANTITATIVE LOGIC AND SOFT COMPUTING 2012), pp. 410-419. [paper]
  22. Sahoo SS, Ogbuji C, Luo L, Dong X, Cui L, Redline SS, Zhang GQ. MiDas: Automatic Extraction of a Common Domain of Discourse in Sleep Medicine for Multi-center Data Integration. AMIA Annual Symp Proc 2011, pp. 1196-1205. [paper]
  23. Zhang GQ, Cui L*. A set coverage problem. Information Processing Letters, 2010;110(4): 158-159. [paper]
  24. Cui L*, Li Y, Zhang X. Intuitionistic fuzzy linguistic quantifiers based on intuitionistic fuzzy-valued fuzzy measures and integrals. International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems, 2009;17(3): 427-448. [paper]
  25. Cui L*, Li Y. Linguistic quantifiers based on Choquet integrals. International Journal of Approximate Reasoning, 2008;48: 559-582. [paper]

    Licong Cui, PhD
    Research Assistant Professor
    Division of Medical Informatics and Department of Electrical Engineering and Computer Science

    https://sites.google.com/site/cuilicong/